Publications in
Computational
Biology
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Xie, Y., Fan, J., Chen, J., Huang, F.-P., Cao, B., Tam,
P.K.H., Ren, Y. (2009). A novel function for dendritic cell: Clearance of VEGF via VEGF receptor-1.
Biochemical and Biophysical Research Communications,
380, 243-248
- Kim, B.-R., Zhang, L., Berg, A., Fan, J. and Wu, R. (2008). A computational approach to the functional clustering of periodic gene expression profiles. Genetics, 180, 821-834.
- Ren, Y., Xie, Y., Jiang, G., Fan,
J., Yeung, J., Li, W., Tam, P., Savill, J. (2008). Apototic cells protect mice
against lipopolysaccharide-induced shock. The Journal of Immunology, 180, 4978--4985.
- Xie, Y., Chan, H., Fan, J., Chen, Y., Young, J., Li, W., Miao, X., Yuan, Z., Wang, H., Tam, P.K., Ren, Y. (2007). Involvement of visinin like porotein-1 (VSNL-1) in regulating proliferative and invasive properties of neuroblastoma. Carcinogenesis, 28, 2122-2130.
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Fan,
J. and Niu, Y. (2007). Selection and validation of normalization methods
for c-DNA microarrays using within-array replications. Bioinformatics,23,
2391-2398.
R-code used for data analysis: Some adaptations are needed
Matlab-code used for simulation studies
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Fan, J.
and Ren, Y. (2006). Statistical Analysis of DNA Microarray Data in Cancer
Research. Clinical Cancer Research, 12, 4469--4473. (Invited review
article)
- Ren, Y., Chan, H.M., Fan, J., Chen, Y.X., Xie, Y., Li, W., Jiang, G.P., Liu,
Q., and Tam, P. (2006). Inhibition of tumor
growth and metastasis in vitro and in vivo by targeting macrophage migration
inhibitory factor in human neuroblastoma. Oncogene, 25, 3501-3508.
- Fan, J. Chen, Y., Chan, H.M., Tam, P.K.H. and Ren, Y. (2005).
Removing intensity effects and identifying significant genes for
Affymetrix arrays in MIF-suppressed neuroblastoma cells. Proc. Natl. Acad. Sci., 102, 17751-17756.
- Fan, J., Huang, T. and Peng, H. (2005). Semilinear high-dimensional
model for normalization of microarray data: a theoretical
analysis and partial consistency. (with discussion) Journal of American Statistical Association, 100,
781--813.
- Ren, Y., He, Q.Y., Fan, J., Jones, B., Zhou, Y. Wu, A., Xie, Y., Cheung, C.Y., Chiu, J.F, Peiris, JSM and Tam, P. (2004). The use of proteomics to identify serum biomarkers for diagnosis of severe acute respiratory syndrome (SARS). Proteomic, 4, 3477-3484.
- Fan, J., Tam, P., Vande Woude, G. and Ren, Y. (2004).
Normalization and analysis of cDNA micro-arrays
using within-array replications applied to neuroblastoma
cell response to a cytokine. Proc. Natl. Acad. Sci.,
101, 1135-1140.